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EMBRIO Multi-Scale Modeling E-Book
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EMBRIO Multi-Scale Modeling E-Book

Contents:

  • Notes on Current Build (0.999…)
  • Introduction
  • Module 0: Introduction to Scientific Computing
  • Module 1: Introduction to Biological Modeling
  • Module 2: Building Mathematical Models
  • Module 3: Implementing Simulations
  • Module 4: Data Analysis
  • Module 5: Validity, Reliability, and Model Improvement
  • Module 6: Suggested Best Practices
  • Module 7: Key Biological Concepts
  • Module 8: Worked Examples
  • Model Paper: Ethanol and Acetaldehyde Metabolism in Human Beings
  • Project: Reaction and Diffusion in an Antibody Detection Device
  • Project: MAXTox Manufacturing
  • Project: Circadian Rhythms
  • Project: Chemotaxis Adaptation
  • Signaling pathway dynamics
  • Chemical Reactor Stability and Sensitivity
  • Morphogen Gradients
  • Equations of State
  • Appendix #: Catalog of Jupyter Notebooks
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